RUN_TIPP_TOOL.PY(1)

NAME
run_tipp_tool.py - helper tool to convert a classification file into a profile

DESCRIPTION
usage: run_tipp_tool.py [-h] [-g GENE] [-o OUTPUT] [-d OUTPUT_DIR] [-i INPUT] [-t THRESHOLD]

Performs various tools for TIPP.

  optional arguments:

-h, --help
    show this help message and exit

-g GENE, --gene GENE
    use GENE's reference package

-o OUTPUT, --output OUTPUT
    output files with prefix OUTPUT. [default: output]

-d OUTPUT_DIR, --outdir OUTPUT_DIR
    output to OUTPUT_DIR directory. full-path required. [default: .]

-i INPUT, --input INPUT
    input file. full-path required. (_classification.txt file from running run_tipp.py)

-t THRESHOLD, --threshold THRESHOLD
    Threshold for classification [default: 0.95]

SEE ALSO
run_tipp.py(1)