BLASTN 2.0.11 [Jan-20-2000]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|859351|gb|G06106|G06106 human STS WI-6344.
         (183 letters)

Database: data/sts
           87,792 sequences; 31,998,854 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gi|859351|gb|G06106|G06106 human STS WI-6344.                        327  1e-89
gi|1341350|gb|G21024|G21024 human STS WI-30979.                       32  1.0
gi|6126285|gb|G60966.1|G60966 SHGC-84377 Human Homo sapiens STS...    30  4.1
gi|5222421|gb|G51244.1|G51244 SHGC-80725 Human Homo sapiens STS...    30  4.1
gi|1340656|gb|G20319|G20319 human STS A005L39.                        30  4.1
gi|860526|gb|G07281|G07281 human STS WI-9430.                         30  4.1

QUERY 1   acttgggnctacatgggccagaggtggtttattcagtctccataagagaggggacaaacg 60
558   1   ............................................................ 60
64020 49                                       ...............         63
41022 53                    ...............                            39
1005  172                   ...............                            158

QUERY 61  gcacagttgggtccgtgaagaggagggtccaagagctnacaagagagcctctctgagatt 120
558   61  ............................................................ 120
27080 33           .............a......                                14

QUERY 121 tgacccctncatcccctnctcagggnggttgtggagtcactgggcctcatgggntaggcc 180
558   121 ............................................................ 180
63702 184                                     ...............          198

QUERY 181 cag 183
558   181 ... 183
  Database: data/sts
    Posted date:  Feb 11, 2000  2:37 PM
  Number of letters in database: 31,998,854
  Number of sequences in database:  87,792
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1902
Number of Sequences: 87792
Number of extensions: 1902
Number of successful extensions: 481
Number of sequences better than 10.0: 8
length of query: 183
length of database: 31,998,854
effective HSP length: 16
effective length of query: 167
effective length of database: 30,594,182
effective search space: 5109228394
effective search space used: 5109228394
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 10 (19.8 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
