LAMMPS (31 Jul 2019)
  using 1 OpenMP thread(s) per MPI task
# Initialization
units           metal
boundary        p p p
atom_style      full
processors      * * 1     # domain decomposition over x and y

# System and atom definition
# we use 2 atom types so that inter- and intra-layer
# interactions can be specified separately
read_data       hBN_AB_stack_2L_noH_equi_300K.data
  orthogonal box = (0 0 0) to (43.38 42.5773 100)
  1 by 1 by 1 MPI processor grid
  reading atoms ...
  1360 atoms
  reading velocities ...
  1360 velocities
  0 = max # of 1-2 neighbors
  0 = max # of 1-3 neighbors
  0 = max # of 1-4 neighbors
  1 = max # of special neighbors
  special bonds CPU = 0.000251532 secs
  read_data CPU = 0.00451231 secs
mass            1 10.8110   # boron mass (g/mole) | membrane
mass            2 14.0067   # nitrogen mass (g/mole) | adsorbate
mass            3 10.8110   # boron mass (g/mole) | membrane
mass            4 14.0067   # nitrogen mass (g/mole) | adsorbate
# Separate atom groups
group membrane  type 1 2
680 atoms in group membrane
group adsorbate type 3 4
680 atoms in group adsorbate

######################## Potential defition ########################
pair_style  hybrid/overlay  tersoff  ilp/graphene/hbn 16.0 coul/shield 16.0 1
####################################################################
pair_coeff  * * tersoff          BNC.tersoff   NULL NULL B N  # chemical
Reading potential file BNC.tersoff with DATE: 2013-03-21
pair_coeff  * * ilp/graphene/hbn BNCH-old.ILP  B N B N  # long range
pair_coeff  1 3 coul/shield 0.70
pair_coeff  1 4 coul/shield 0.69498201415576216335
pair_coeff  2 3 coul/shield 0.69498201415576216335
pair_coeff  2 4 coul/shield 0.69
####################################################################
# Neighbor update settings
neighbor        2.0 bin
neigh_modify    every 1
neigh_modify    delay 0
neigh_modify    check yes

#### Simulation settings ####
timestep  0.001
#velocity  adsorbate create 300.0 12345
fix       subf membrane setforce 0.0 0.0 0.0
fix       thermostat all nve

compute   0 all pair tersoff
compute   1 all pair coul/shield ecoul
compute   2 all pair ilp/graphene/hbn
variable  Tersoff  equal c_0
variable  Ecoul    equal c_1
variable  ILP      equal c_2
variable  Evdw     equal c_2[1]
variable  Erep     equal c_2[2]

############################

# Output
thermo          100
thermo_style    custom step etotal pe ke v_Tersoff v_ILP v_Ecoul v_Erep v_Evdw temp
thermo_modify   lost warn #ignore

#dump            1 all custom 1000 traj.lammpstrj id mol type xu yu zu
#dump_modify     1 format line "%7d %3d %3d %15.10g %15.10g %15.10g" flush yes

###### Run molecular dynamics ######
run 1000
Neighbor list info ...
  update every 1 steps, delay 0 steps, check yes
  max neighbors/atom: 2000, page size: 100000
  master list distance cutoff = 18
  ghost atom cutoff = 18
  binsize = 9, bins = 5 5 12
  5 neighbor lists, perpetual/occasional/extra = 5 0 0
  (1) pair tersoff, perpetual, skip from (4)
      attributes: full, newton on
      pair build: skip
      stencil: none
      bin: none
  (2) pair ilp/graphene/hbn, perpetual
      attributes: full, newton on, ghost
      pair build: full/bin/ghost
      stencil: full/ghost/bin/3d
      bin: standard
  (3) pair coul/shield, perpetual, skip from (5)
      attributes: half, newton on
      pair build: skip
      stencil: none
      bin: none
  (4) neighbor class addition, perpetual, copy from (2)
      attributes: full, newton on
      pair build: copy
      stencil: none
      bin: none
  (5) neighbor class addition, perpetual, half/full from (4)
      attributes: half, newton on
      pair build: halffull/newton
      stencil: none
      bin: none
Per MPI rank memory allocation (min/avg/max) = 54.59 | 54.59 | 54.59 Mbytes
Step TotEng PotEng KinEng v_Tersoff v_ILP v_Ecoul v_Erep v_Evdw Temp 
       0   -5114.6628   -5127.8586    13.195828   -5091.4121   -36.083114  -0.36343598    38.918674   -75.001787    75.119474 
     100   -5114.6621   -5127.6958    13.033777   -5091.2408    -36.09276  -0.36228286    38.769906   -74.862666    74.196973 
     200   -5114.6631   -5127.5945     12.93145   -5091.1508   -36.086669  -0.35708801     38.20076   -74.287429    73.614462 
     300   -5114.6694   -5128.3286     13.65924   -5091.8646   -36.110786  -0.35328159    37.758284    -73.86907    77.757528 
     400   -5114.6614   -5127.6424    12.980975   -5091.2348   -36.049634  -0.35794328    38.247252   -74.296886    73.896389 
     500     -5114.66   -5127.4098    12.749794   -5090.9285   -36.119571  -0.36174976    38.745548   -74.865119    72.580351 
     600   -5114.6673   -5128.0913    13.424021   -5091.6339    -36.09384  -0.36356991    38.927401   -75.021241    76.418503 
     700    -5114.661   -5127.7467    13.085707   -5091.2811   -36.106639  -0.35892399    38.332616   -74.439255    74.492596 
     800   -5114.6623    -5128.013    13.350778   -5091.5694   -36.089718  -0.35392503    37.851602    -73.94132    76.001554 
     900   -5114.6675   -5128.1497    13.482146   -5091.6704   -36.124679  -0.35462869    37.885183   -74.009861    76.749392 
    1000   -5114.6683   -5128.3365    13.668146    -5091.937   -36.037596  -0.36184347    38.709718   -74.747314    77.808228 
Loop time of 207.028 on 1 procs for 1000 steps with 1360 atoms

Performance: 0.417 ns/day, 57.508 hours/ns, 4.830 timesteps/s
99.9% CPU use with 1 MPI tasks x 1 OpenMP threads

MPI task timing breakdown:
Section |  min time  |  avg time  |  max time  |%varavg| %total
---------------------------------------------------------------
Pair    | 206.9      | 206.9      | 206.9      |   0.0 | 99.94
Bond    | 0.00019169 | 0.00019169 | 0.00019169 |   0.0 |  0.00
Neigh   | 0          | 0          | 0          |   0.0 |  0.00
Comm    | 0.081397   | 0.081397   | 0.081397   |   0.0 |  0.04
Output  | 0.00036597 | 0.00036597 | 0.00036597 |   0.0 |  0.00
Modify  | 0.033408   | 0.033408   | 0.033408   |   0.0 |  0.02
Other   |            | 0.01615    |            |       |  0.01

Nlocal:    1360 ave 1360 max 1360 min
Histogram: 1 0 0 0 0 0 0 0 0 0
Nghost:    7840 ave 7840 max 7840 min
Histogram: 1 0 0 0 0 0 0 0 0 0
Neighs:    249628 ave 249628 max 249628 min
Histogram: 1 0 0 0 0 0 0 0 0 0
FullNghs:  253390 ave 253390 max 253390 min
Histogram: 1 0 0 0 0 0 0 0 0 0

Total # of neighbors = 253390
Ave neighs/atom = 186.316
Ave special neighs/atom = 0
Neighbor list builds = 0
Dangerous builds = 0
Total wall time: 0:03:27
