LAMMPS (27 Nov 2018)
  using 1 OpenMP thread(s) per MPI task
# small Peridynamic cylinder hit by projectile

units           si
boundary        s s s
atom_style      peri
atom_modify     map array
neighbor        0.0010 bin

# small target

lattice         sc 0.0005
Lattice spacing in x,y,z = 0.0005 0.0005 0.0005
region          target cylinder y 0.0 0.0 0.0050 -0.0050 0.0 units box
create_box      1 target
Created orthogonal box = (-0.005 -0.005 -0.005) to (0.005 0 0.005)
  2 by 1 by 2 MPI processor grid
create_atoms    1 region target
Created 3487 atoms
  Time spent = 0.000591755 secs

pair_style      peri/pmb
pair_coeff      * * 1.6863e22 0.0015001 0.0005 0.25
set             group all density 2200
  3487 settings made for density
set             group all volume 1.25e-10
  3487 settings made for volume
velocity        all set 0.0 0.0 0.0 sum no units box
fix             1 all nve

# spherical indenter to shatter target

variable        y0 equal 0.00155
variable        vy equal -100
variable        y equal "v_y0 + step*dt*v_vy"

fix             2 all indent 1e17 sphere 0.0000 v_y 0.0000 0.0015 units box

compute         1 all damage/atom
timestep        1.0e-7
thermo          100

#dump            1 all custom 100 dump.peri id type x y z c_1

#dump           2 all image 50 image.*.jpg type type #               axes yes 0.8 0.02 view 80 -30 adiam 0.0006
#dump_modify    2 pad 4

#dump           3 all movie 50 movie.mpg type type #               axes yes 0.8 0.02 view 80 -30 adiam 0.0006
#dump_modify    3 pad 4

run             1000
Neighbor list info ...
  update every 1 steps, delay 10 steps, check yes
  max neighbors/atom: 2000, page size: 100000
  master list distance cutoff = 0.0025001
  ghost atom cutoff = 0.0025001
  binsize = 0.00125005, bins = 9 5 9
  2 neighbor lists, perpetual/occasional/extra = 1 1 0
  (1) pair peri/pmb, perpetual
      attributes: half, newton on
      pair build: half/bin/atomonly/newton
      stencil: half/bin/3d/newton
      bin: standard
  (2) fix PERI_NEIGH, occasional
      attributes: full, newton on
      pair build: full/bin/atomonly
      stencil: full/bin/3d
      bin: standard
Peridynamic bonds:
  total # of bonds = 335966
  bonds/atom = 96.3482
Per MPI rank memory allocation (min/avg/max) = 29.27 | 29.54 | 29.64 Mbytes
Step Temp E_pair E_mol TotEng Press Volume 
       0            0            0            0            0            0 5.0030006e-07 
     100 1.7890585e+24     552721.8            0    681881.47 1.7210968e+11 5.0030006e-07 
     200 1.3549879e+27    3097027.6            0 1.0091931e+08 1.1829272e+14 5.5130066e-07 
     300 3.3009625e+27    6331254.8            0 2.4464163e+08 1.9647265e+14 8.0862953e-07 
     400 3.815184e+27    6225081.7            0 2.8165928e+08 1.8189267e+14 1.0095118e-06 
     500 4.2580877e+27     20212686            0 3.2762196e+08 1.6249923e+14 1.2611723e-06 
     600 5.5126512e+27     30861342            0 4.2884284e+08 1.7320038e+14 1.531873e-06 
     700 1.1807414e+28     23119941            0 8.7554687e+08 2.9477434e+14 1.9278632e-06 
     800 1.2424839e+28    2407361.5            0 8.994088e+08 2.3787786e+14 2.5138992e-06 
     900 1.2358395e+28    4532520.1            0 8.9673706e+08 1.9097312e+14 3.1145903e-06 
    1000 1.2341057e+28    3219974.3            0 8.9417286e+08 1.5968598e+14 3.7196039e-06 
Loop time of 4.86638 on 4 procs for 1000 steps with 3487 atoms

98.2% CPU use with 4 MPI tasks x 1 OpenMP threads

MPI task timing breakdown:
Section |  min time  |  avg time  |  max time  |%varavg| %total
---------------------------------------------------------------
Pair    | 3.524      | 3.9207     | 4.4499     |  17.8 | 80.57
Neigh   | 0.12891    | 0.16928    | 0.21015    |   9.0 |  3.48
Comm    | 0.1204     | 0.70321    | 1.1349     |  46.1 | 14.45
Output  | 0.00028253 | 0.00053787 | 0.0012429  |   0.0 |  0.01
Modify  | 0.03231    | 0.033227   | 0.034578   |   0.5 |  0.68
Other   |            | 0.03944    |            |       |  0.81

Nlocal:    871.75 ave 920 max 824 min
Histogram: 1 0 0 1 0 0 1 0 0 1
Nghost:    1343.25 ave 1391 max 1295 min
Histogram: 1 0 0 1 0 0 1 0 0 1
Neighs:    141785 ave 170754 max 115891 min
Histogram: 1 1 0 0 0 0 0 1 0 1
FullNghs:  302269 ave 346070 max 260820 min
Histogram: 1 0 0 0 2 0 0 0 0 1

Total # of neighbors = 1209076
Ave neighs/atom = 346.738
Neighbor list builds = 46
Dangerous builds = 0

Please see the log.cite file for references relevant to this simulation

Total wall time: 0:00:04
